rs229430552 SNP Detail

Summary

• ID
  rs229430552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94536172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTGGCC CCTTGCCTGT
  CTTTATCCTG GGCAGTCTTG CCTGTTGGCT CCTCCATCTA GGAAGGCCCC TGGGGCTGAC
  TGGTGGAACT GATTGTAAAA CTATTTTGTG CAGTAAGAAT TAATGTCTTC AGGCTCTGAG
  ACCACCCAGA ACATGACCGA TCTTTGGCAA CTGTCTACTG TTTTCCCCAG TGCTGGGTTC
  R
  CTGTTTGCTG AATAACTGAC CCTGGTTTCT GACTATCTGA GAAGATATGA AGGGTGTATT
  TCTTCTAGTA GTTTGTTATT TTAAGATGAA AGGAAGAAAA AAAATCTCTT ATCACAAACC
  TATGAAGAAT TCATTTTTAC CGGATTATGT TCTGGGGATA CAAGAATTCA AGAACCAAGG
  GAGGCCATCG ATTCATCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375627886	MGP_WTSI_8_96333444	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229430552					SNP	A	A	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375627886	MGP_WTSI_8_96333444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94536172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20831	CpG island 20831	216 bp proximal
Gnao1	guanine nucleotide binding protein, alpha O	1041 bp upstream
Rr667832	regulatory region 667832	within coordinates
Rr667833	regulatory region 667833	736 bp proximal
Rr667834	regulatory region 667834	1370 bp proximal
Rr667835	regulatory region 667835	1780 bp proximal
Tssr78791	transcription start site region 78791	921 bp upstream
Tssr78792	transcription start site region 78792	1008 bp upstream
Tssr78793	transcription start site region 78793	1028 bp upstream
Tssr78794	transcription start site region 78794	1227 bp upstream
Tssr78795	transcription start site region 78795	1246 bp upstream
Tssr78796	transcription start site region 78796	1263 bp upstream
Tssr78797	transcription start site region 78797	1275 bp upstream
Tssr78798	transcription start site region 78798	1288 bp upstream
Tssr78799	transcription start site region 78799	1344 bp upstream
Tssr78800	transcription start site region 78800	1386 bp upstream
Tssr78801	transcription start site region 78801	1446 bp upstream
Tssr78802	transcription start site region 78802	1539 bp upstream
Tssr78803	transcription start site region 78803	1739 bp upstream
Tssr78804	transcription start site region 78804	1778 bp upstream
Tssr82468	transcription start site region 82468	681 bp downstream