rs229435539 SNP Detail

Summary

• ID
  rs229435539
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29892913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTCGG GTTCAGTTGT
  CCAGAGTCTT ACTCCATCGC TCCTTTTGCA GATTATCTAA CTGCCTAACG TCTACCTCTC
  CCGCCCCCCA TCAGCCCCTA CTCCTCCCAG GGATCAGTGC TTGGATCACC AACGATATAG
  GTGCCAGCCA CCTGTTCTAA CCCCAGCAAA GGATTTTTAC CCACTAAACC AATCAGCTCC
  M
  GACCCCACAC AACCTTCTCT GGACCATTTC TTCTTTGGGG ACTCTGATCT CTCCTAAAAC
  AGCAAGCTCC ACCTCGCTCA AATCTTAAGC CATGGACAGC CTTAGATCCA CTGGCTGCGC
  CCCCAGTGAA GGCTGGATAC AATCCTATAG AATTGCACCT TCCCCAAACA CAGAAGAGCC
  CCTATCCCCA AGAAACTGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370900981	MGP_WTSI_7_30978507	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229435539					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370900981	MGP_WTSI_7_30978507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29892913 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	459 bp distal
Cpgi18782	CpG island 18782	299 bp proximal
Cpgi18783	CpG island 18783	991 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	116 bp upstream
Rr400233	regulatory region 400233	1547 bp upstream
Tssr65662	transcription start site region 65662	441 bp upstream
Tssr71696	transcription start site region 71696	558 bp upstream
Tssr71697	transcription start site region 71697	537 bp upstream
Tssr71698	transcription start site region 71698	506 bp upstream
Tssr71699	transcription start site region 71699	380 bp upstream
Tssr71700	transcription start site region 71700	345 bp upstream
Tssr71701	transcription start site region 71701	121 bp upstream
Tssr71702	transcription start site region 71702	306 bp downstream
Tssr71703	transcription start site region 71703	512 bp downstream
Tssr71704	transcription start site region 71704	606 bp downstream
Tssr71705	transcription start site region 71705	664 bp downstream
Tssr71706	transcription start site region 71706	1532 bp downstream
Tssr71707	transcription start site region 71707	1544 bp downstream
Tssr71708	transcription start site region 71708	1558 bp downstream
Tssr71709	transcription start site region 71709	1733 bp downstream