rs229438329 SNP Detail

Summary

• ID
  rs229438329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19121471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAATAAA ATCTGACAGT
  AGTGGGTTTG AAGCAAAATT ATTTGAATAA CTATTGCCAC TTAAATAGAA ATAGAAAAGT
  TTATGGTAAA CATACTATTT TGAAAATCGC TTTTGGACTT AACTTCATTT GGTAAAAAAG
  TATAAAATAT TTTTATTGGA ATAAATATTC AAAGTAACAA TTAATAATTA TAGTTTGTAT
  R
  ATATGTATTT AATATTTTAT GTGTATCTAG ATGTATTTTA CATACACACA AATACATAAT
  ATATTTCTTC AAAAGGCATA AGTTTTTGCA TTTTATATCT TTTCTCTGGA AATGATAATA
  GTGAAATATT AAATTTTATC TAGAAGTTAA CTCTCATGGA AAGATAGAAA AAAAAATATG
  AGAATTGTTT ACTTAGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360773390	MGP_WTSI_4_19048618	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229438329					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360773390	MGP_WTSI_4_19048618	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19121471 () rs orientation: forward

Symbol	Name	Function Class
Cnbd1	cyclic nucleotide binding domain containing 1	within coordinates
Gm42258	predicted gene, 42258	1165 bp upstream
Tssr1124	transcription start site region 1124	1162 bp upstream
Tssr36571	transcription start site region 36571	1182 bp upstream
Tssr40994	transcription start site region 40994	1040 bp downstream
Tssr40995	transcription start site region 40995	1057 bp downstream
Tssr40996	transcription start site region 40996	1065 bp downstream