rs229440276 SNP Detail

Summary

• ID
  rs229440276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86288703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATGAGCTG TGAGTGTGAA ATGACTTGGG
  TGACATGGCT TCCTTTGTCA ATCCAATCTA TCTGTATGGG CTATCCTCAG CCCTCTGGTG
  TACAGTGCCA CTAAGAGACC TCTGCTTGCA CCCAAGGTTA GTTACACTCT CAGATATCAG
  Y
  TGCCTAGTAC TTTTCTTGGC CATTTATTGT TCATTTGCCC CTTCCCCAGA CAGCACAGAC
  tgttgtctgc tttattcttg gtacctaaag cattgcctgg catatgatag tgttggaaat
  tacttgctaa ctggagtgaa CAGAAGTTTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828140	CHEV_1_88257556	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229440276					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86288703 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	within coordinates
Cpgi503	CpG island 503	646 bp distal
Gm71192	predicted gene, 71192	1016 bp upstream
Ncl	nucleolin	1581 bp upstream
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	1365 bp downstream
Tssr7749	transcription start site region 7749	1391 bp downstream
Tssr7750	transcription start site region 7750	1289 bp downstream
Tssr12788	transcription start site region 12788	1984 bp upstream
Tssr12789	transcription start site region 12789	1935 bp upstream
Tssr12790	transcription start site region 12790	1600 bp upstream
Tssr12791	transcription start site region 12791	1495 bp upstream
Tssr12792	transcription start site region 12792	1015 bp upstream