rs229442552 SNP Detail

Summary

• ID
  rs229442552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104422893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC CCCCGCCCCC TCACTTGTGG
  Y
  TTTCCCTGGT GCAGTTTAAA ACACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324514936	CHEV_13_105076465	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229442552					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104422893 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	1450 bp upstream
Gm60746	predicted gene, 60746	129 bp downstream
Gm60750	predicted gene, 60750	715 bp upstream
Rr369763	regulatory region 369763	426 bp upstream
Rr403946	regulatory region 403946	67 bp downstream
Tssr120915	transcription start site region 120915	648 bp upstream
Tssr120916	transcription start site region 120916	704 bp upstream
Tssr120917	transcription start site region 120917	733 bp upstream
Tssr120918	transcription start site region 120918	751 bp upstream
Tssr120919	transcription start site region 120919	972 bp upstream
Tssr120920	transcription start site region 120920	1067 bp upstream
Tssr120921	transcription start site region 120921	1106 bp upstream
Tssr120922	transcription start site region 120922	1123 bp upstream
Tssr120923	transcription start site region 120923	1470 bp upstream
Tssr120924	transcription start site region 120924	1517 bp upstream
Tssr120925	transcription start site region 120925	1547 bp upstream