rs229443489 SNP Detail

Summary

• ID
  rs229443489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107376367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACAGACA
  CACACACACA TACACACAAC CATAGAGCTC TGGGTCCTAT GTCCAACTCA CAGAAGCAAA
  GATGTAGCCA GGACAGATTC TGGCTTACAG CAAAAGGCTA CAACACACAC TACAGAGCCC
  ACAAGGCATA AGCAAACAGC CCTAGCTCAG CTCCACCCAG CCCCCCGCCC CCACCCCCCA
  Y
  CCCCCACTCA CTGCAGGCTC ACAGGCTGGG GCCTGGCCCA GCCACGCTAC AAAATTAAAA
  ATATATCAAA TATACAATGA AAATAGATCT GTACGGCACT GAGGATGAAA ATAGTCCACC
  AGCCACAGTA TAATATTGGG TTTGTCATTT CACAGCATCT ACACCCACAT GTACAGATTG
  AATGTACAAT AGAAATAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss359146189	MGP_WTSI_3_107271969	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs229443489					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359146189	MGP_WTSI_3_107271969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107376367 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	569 bp proximal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates