rs229444562 SNP Detail

Summary

• ID
  rs229444562
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20367569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC ACATTTCTCC CAGGTCTTTA
  T
  TCAGCCTCCA CAGGCTCAGT CAGGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324281234	CHEV_13_20275268	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229444562					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20367569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	1851 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	432 bp proximal
Rr270988	regulatory region 270988	1432 bp proximal
Rr281054	regulatory region 281054	831 bp proximal
Rr403595	regulatory region 403595	1664 bp upstream
Tssr118580	transcription start site region 118580	1541 bp upstream
Tssr118581	transcription start site region 118581	1599 bp upstream
Tssr118582	transcription start site region 118582	1888 bp upstream
Tssr118583	transcription start site region 118583	1923 bp upstream