rs229453874 SNP Detail

Summary

• ID
  rs229453874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65754813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAAGAT ATATTTGGTT
  TCATGGGCTG AGAGGTTTCG TGGCTCCATC ACTTTCATGT CTCATGGCAA CACAGAGGCA
  CGTTGATGTA AAGGTAGAGA AAAGCTGCTC ACCTTGGCAT CCAGGAATCA GAGAAAGATG
  AAGAGGGACC TTAATGTCCT TTAAGAGAAT GCTCATTTAA TGACTTACGT TGTCCTATCA
  R
  GCTCTATCTT TTAAGTTCTA CCAGCTTCCA ATAGTAGCAC TGGATAATGA ATATGTCTAT
  GGATGAATCC ATTGACTAGG CTAGAACATT CCTTATACAA TCACTTCCCA AAAGTATTCA
  ACACATGAGT TTTGGCGAGA CATTACCAAG GACTACATTA CAGTCCTTTT AACAGCTACT
  CTGCTTTCTA CTCTGATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809790	CHEV_6_65727823	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229453874					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65754813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	812 bp proximal
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	1159 bp upstream
Tssr56854	transcription start site region 56854	1165 bp upstream
Tssr61222	transcription start site region 61222	1807 bp downstream
Tssr61223	transcription start site region 61223	1860 bp downstream
Tssr61224	transcription start site region 61224	1868 bp downstream
Tssr61225	transcription start site region 61225	1885 bp downstream
Tssr61226	transcription start site region 61226	1944 bp downstream