rs229463867 SNP Detail

Summary

• ID
  rs229463867
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115219036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCATCAA ATTCCTCTCT
  GGCGATGTGC AACTGGCACT TTAAGTATCA CTCTTAACTC TCTGCAGCAG CCAGAAGGCT
  TTTTATTATG TAAATCTAAC CGTGCCCGTC TTTTCATAGT CATGGGGCTT CTTCAAGTAC
  TCTTGGAACA AAGTAGAAAA CGCTTTAATA TAGAAGACCA AATCTCTGTC ATCCTTTGGT
  S
  TCATCTGACA TGTCACCTCT TTTGTGAAGT GTCCTTTGAC TTTCTGAGGC TAAATTAGGT
  CTCTCTGAAA GTCTTTTCTG TGGCACTCAA CAGAAATTAT GCCGCACTCC TCTATTCAAT
  TCTAAAGTCC CCGAGGGTAA GAACTATCTA CATCATTAGC ATAATGTCCG GCAATTAGGG
  ACCCAGTGTA CATTAGCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484708	CHEV_10_114820187	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229463867					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115219036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	904 bp proximal
Rr402239	regulatory region 402239	1597 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	1162 bp proximal
Rr439215	regulatory region 439215	1269 bp proximal
Rr439216	regulatory region 439216	1828 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	786 bp upstream
Tssr95814	transcription start site region 95814	1790 bp upstream
Tssr95815	transcription start site region 95815	1820 bp upstream
Tssr95816	transcription start site region 95816	1914 bp upstream
Tssr99330	transcription start site region 99330	1195 bp downstream
Tssr99331	transcription start site region 99331	1206 bp downstream
Tssr99332	transcription start site region 99332	1257 bp downstream
Tssr99333	transcription start site region 99333	1345 bp downstream
Tssr99334	transcription start site region 99334	1385 bp downstream
Tssr99335	transcription start site region 99335	1620 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	1828 bp upstream