rs229466007 SNP Detail

Summary

• ID
  rs229466007
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26493922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACACAG GACTTAACTA
  AAAAAAAAAA TCACAATCTT CAGGGGGAAT GTGACTCAAA TTTCACATAG AAAAATCTAC
  ATAGGAGTTG GTTAATACAC ACGTGCAATC CCTAGCACTT GAGAGGGTGA GGTTAGGGCA
  GAGGTATCAT GAGTTCCAGG CCAGCCTGGG CTACATAGTT ATATTTATAC TCAAGCAAAA
  W
  TAGGTAAAAC ACACACACAC ACACACACAC ACACACTAGA AAACACAGAA AACCCTGACC
  TATATTTTTC ATGAGACAAA GTGTGTCTCA GTTGAATTAT AATGACCTAA CTAAAGTATG
  AACATCTTTT GTGAGTAAAT ACCCCAAATT CCAGTTCCTT AGAAAAATTT TAGTATTAAT
  ATAAGCACCA AAAAAAACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360819	MGP_WTSI_12_27128788	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229466007					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360819	MGP_WTSI_12_27128788	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26493922 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	199 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	170 bp downstream
Tssr112999	transcription start site region 112999	105 bp downstream
Tssr113000	transcription start site region 113000	4 bp downstream
Tssr113001	transcription start site region 113001	463 bp upstream
Tssr113002	transcription start site region 113002	487 bp upstream
Tssr113003	transcription start site region 113003	562 bp upstream
Tssr113004	transcription start site region 113004	622 bp upstream
Tssr113005	transcription start site region 113005	648 bp upstream
Tssr113006	transcription start site region 113006	1011 bp upstream
Tssr113007	transcription start site region 113007	1095 bp upstream
Tssr113008	transcription start site region 113008	1263 bp upstream
Tssr113009	transcription start site region 113009	1281 bp upstream
Tssr113010	transcription start site region 113010	1431 bp upstream
Tssr115902	transcription start site region 115902	1053 bp upstream
Tssr115903	transcription start site region 115903	723 bp upstream
Tssr115904	transcription start site region 115904	699 bp upstream
Tssr115905	transcription start site region 115905	401 bp upstream
Tssr115906	transcription start site region 115906	281 bp upstream
Tssr115907	transcription start site region 115907	222 bp upstream
Tssr115908	transcription start site region 115908	178 bp upstream
Tssr115909	transcription start site region 115909	94 bp upstream
Tssr115910	transcription start site region 115910	40 bp upstream
Tssr115911	transcription start site region 115911	within coordinates
Tssr115912	transcription start site region 115912	13 bp downstream
Tssr115913	transcription start site region 115913	48 bp downstream
Tssr115914	transcription start site region 115914	100 bp downstream
Tssr115915	transcription start site region 115915	129 bp downstream
Tssr115916	transcription start site region 115916	186 bp downstream
Tssr115917	transcription start site region 115917	232 bp downstream
Tssr115918	transcription start site region 115918	251 bp downstream
Tssr115919	transcription start site region 115919	278 bp downstream
Tssr115920	transcription start site region 115920	305 bp downstream
Tssr115921	transcription start site region 115921	610 bp downstream
Tssr115922	transcription start site region 115922	706 bp downstream
Tssr115923	transcription start site region 115923	789 bp downstream
Tssr115924	transcription start site region 115924	860 bp downstream
Tssr115925	transcription start site region 115925	875 bp downstream
Tssr115926	transcription start site region 115926	1224 bp downstream
Tssr115927	transcription start site region 115927	1268 bp downstream