rs229469869 SNP Detail

Summary

• ID
  rs229469869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:91260097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCGTGCC CACAGGAGGG
  GCGGTGCCGG GTACCCGGTC CCCTGCAGGA ACTTCGCGGG CGCTACCTCC ACTGCCGCCA
  GTGGCGTTGT CGCGTGCCCG ACCAGCGCTC GGGTGGAGGC AAGCCGGACG CTGCCTAGCG
  CTGCGGCGGA CACCGAGTCC CGGCCCCAGA GTCCTGGCTG GAGCCCACGG AGGGGCGGCC
  R
  TCCCCGCCCC CACCCCCACC CACGCCCCCC TACACTTGCC TGCTGCGGCT CGGCTGCAGC
  TCCCACGGCT CGCGCCGCCG GCCGACAGCA CCGCTCAGAG GAGTCACGCT GGCGGCGGCG
  GGAAGGCGGA CTGGAACACG ACGGAACCCC GCCCTACCGA CCGGCTGCTG CCTCAGTGAC
  GCTGGGGCGC CGCGGTCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss362388944	MGP_WTSI_4_91038551	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	A	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	A	A	A	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229469869					SNP	G	G	G	G	A	G	G	A	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	A	A	A	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362388944	MGP_WTSI_4_91038551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91260097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14444	CpG island 14444	within coordinates
Cpgi14445	CpG island 14445	1035 bp proximal
Elavl2	ELAV like RNA binding protein 1	within coordinates
Mir6402	microRNA 6402	1424 bp downstream
Rr595258	regulatory region 595258	within coordinates
Rr595259	regulatory region 595259	194 bp distal
Rr595260	regulatory region 595260	164 bp proximal
Rr595261	regulatory region 595261	1085 bp proximal
Tssr42416	transcription start site region 42416	86 bp downstream
Tssr42417	transcription start site region 42417	124 bp downstream
Tssr42418	transcription start site region 42418	168 bp downstream