rs229474173 SNP Detail

Summary

• ID
  rs229474173
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:68800492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCATCG TCGCAGCCGG
  CGAGCAAGAC TGGCCAGCGC TCCTCGGCTT TCCAGCCCGC TCTCTTCGCT CATCCCGCCG
  CCTTGCAGCC CGCGGCCCGC AGCGCGGTGA TCTGGGGCTC CACGGGGCCG GGCTGAGCGG
  CCGCCGCCCG CCCCGAGCCG CCGCCGCCGC CCGGCCGCCC GCCCGGCTTA GCCGCCGAGG
  M
  GCCTGGCGGG GTCCGCGCCG CCGGGGGCGG GCGGCTCGGG CTGCGGGGCG GCTGGCGCGC
  GCGCGCCGCG GGGCGGAGAA GCGGGCCCGG CGGCCGGCGA GCATGGAGGA GAAGTACCTG
  CCGGAGCTGA TGGCGGAGAA GGACTCTCTG GACCCCTCCT TCACGCACGC CCTGCGCTTG
  GTGAACCGAG GTGAGCTCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss394433430	MGP_WTSI_15_68759073	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs229474173					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394433430	MGP_WTSI_15_68759073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:68800492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7148	CpG island 7148	within coordinates
Khdrbs3	KH domain containing, RNA binding, signal transduction associated 3	within coordinates
Rr503804	regulatory region 503804	within coordinates
Rr503805	regulatory region 503805	311 bp distal
Rr503806	regulatory region 503806	65 bp proximal
Tssr131505	transcription start site region 131505	250 bp downstream
Tssr131506	transcription start site region 131506	234 bp downstream
Tssr131507	transcription start site region 131507	222 bp downstream
Tssr131508	transcription start site region 131508	191 bp downstream
Tssr131509	transcription start site region 131509	160 bp downstream
Tssr131510	transcription start site region 131510	60 bp upstream
Tssr131511	transcription start site region 131511	716 bp upstream