rs229485201 SNP Detail

Summary

• ID
  rs229485201
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCGGCC CAAGATAGTT
  TTGGCTCATG TTTCATCACA GCAATAGAAA AGTGAAAAGA TCCAAAAGTT ATCTATCATG
  ATCACTTCAG TTTCATCCTA GAGATGGAGG GATGTCACAA TATATACAAG TCAAGGAGTG
  TAATGAACCA TGCAAATAAA CCCAAGGACA GAAACCACAT GGTCTTTGTG ATTTCTTTGT
  K
  TGCCCTTTGA TGGAATTCAG AATCTTTTAA TATGAAGCTC CTAGAGATTC TAGGGATACA
  GAAGAGATAG CACAATATAA TAAAGGTAAC ATAAAACAAC CCAAATTCCA GCATGAATGG
  CATGGAGCTC ATGAAATTCC ATCCTCAGCT GAGGATGGTC AATTGGCTAT TGTTGCCTGC
  TGGAGCAGGT GGAGTGTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922360	MGP_WTSI_6_123232151	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229485201					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922360	MGP_WTSI_6_123232151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259092 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	597 bp upstream
Tssr58809	transcription start site region 58809	1259 bp upstream
Tssr58810	transcription start site region 58810	1285 bp upstream
Tssr58811	transcription start site region 58811	1321 bp upstream
Tssr63019	transcription start site region 63019	561 bp upstream
Tssr63020	transcription start site region 63020	360 bp downstream
Tssr63021	transcription start site region 63021	446 bp downstream
Tssr63022	transcription start site region 63022	481 bp downstream
Tssr63023	transcription start site region 63023	509 bp downstream
Tssr63024	transcription start site region 63024	612 bp downstream
Tssr63025	transcription start site region 63025	665 bp downstream
Tssr63026	transcription start site region 63026	676 bp downstream
Tssr63027	transcription start site region 63027	725 bp downstream
Tssr63028	transcription start site region 63028	738 bp downstream
Tssr63029	transcription start site region 63029	769 bp downstream
Tssr63030	transcription start site region 63030	799 bp downstream
Tssr63031	transcription start site region 63031	856 bp downstream
Tssr63032	transcription start site region 63032	880 bp downstream
Tssr63033	transcription start site region 63033	905 bp downstream
Tssr63034	transcription start site region 63034	924 bp downstream
Tssr63035	transcription start site region 63035	945 bp downstream
Tssr63036	transcription start site region 63036	999 bp downstream
Tssr63037	transcription start site region 63037	1029 bp downstream
Tssr63038	transcription start site region 63038	1066 bp downstream
Tssr63039	transcription start site region 63039	1125 bp downstream
Tssr63040	transcription start site region 63040	1183 bp downstream
Tssr63041	transcription start site region 63041	1232 bp downstream
Tssr63042	transcription start site region 63042	1257 bp downstream
Tssr63043	transcription start site region 63043	1267 bp downstream
Tssr63044	transcription start site region 63044	1289 bp downstream
Tssr63045	transcription start site region 63045	1380 bp downstream
Tssr63046	transcription start site region 63046	1399 bp downstream
Tssr63047	transcription start site region 63047	1422 bp downstream
Tssr63048	transcription start site region 63048	1450 bp downstream
Tssr63049	transcription start site region 63049	1465 bp downstream
Tssr63050	transcription start site region 63050	1489 bp downstream
Tssr63051	transcription start site region 63051	1541 bp downstream