rs229491317 SNP Detail

Summary

• ID
  rs229491317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92490865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCTGCT GCAGAGCCAG
  CATGACACCA GAGGCCTCAC CTGGCGCTGC CAGCCTGAAT TTTACTGAGT CCTCTACCTT
  TGATGCTGTC AAAGCATGAT AGGTCCCTGC TGTCATTTCA GGGGATTTGT TTCATTGAGA
  ATCAAAAGTT CTCCAGAAAA TTGGAATTTA GAAATTAGAC ACCATCCCTT TAAATAGGAC
  Y
  GAAGGGGTCC CTGAGATACA GAACTTTCAC TTTAAAAGCA AGACAGGAGC CAGGAATGCA
  GCTGTGGCAG AATTTGTTTA GCTTGAATAA GACCCTGGGT TCAAAGCCAT GGCCTTTGAA
  CTCAGCAGAG TCCAGCAAAG AATTAACAAA AACCCAGGAA GAGTATGCCT TACTCTTTTC
  AGCAAAGGCC TGTGCCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358859045	MGP_WTSI_3_92387480	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229491317					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358859045	MGP_WTSI_3_92387480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92490865 () rs orientation: forward

Symbol	Name	Function Class
Smcp	sperm mitochondria-associated cysteine-rich protein	309 bp downstream
Tssr30302	transcription start site region 30302	572 bp upstream
Tssr30303	transcription start site region 30303	827 bp upstream
Tssr30304	transcription start site region 30304	848 bp upstream
Tssr30305	transcription start site region 30305	867 bp upstream
Tssr34305	transcription start site region 34305	441 bp downstream
Tssr34306	transcription start site region 34306	607 bp downstream
Tssr34307	transcription start site region 34307	804 bp downstream
Tssr34308	transcription start site region 34308	839 bp downstream
Tssr34309	transcription start site region 34309	872 bp downstream
Tssr34310	transcription start site region 34310	882 bp downstream
Tssr34311	transcription start site region 34311	920 bp downstream
Tssr34312	transcription start site region 34312	945 bp downstream