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rs229493793 SNP Detail
Summary
  • ID
    rs229493793
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19429907 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGGCTCACA ACCATCTGTA
ATGGGACCTG ACGCCTGAAG ACAGCTGCAG TGTACCTTAT ACATAAGATA AACAAATCTT
AAATAAATAA ATAAATAAAA TGAGCCCATG CCTAGAATCC AGGGGTAGGG GGCGGTGAAG
AGCCCCAGAG GCTGTGGGTG TGGCTCAGTG GTAGAGCTAC TGACTAGAAT TCCCGTAGTG
W
GGGGCTGGAG GGGCGTGACT CAGTGGTAGA TATGATTCCC CAGTGAGGGG CTGCGGGTGG
CTCAGTGGTA GAGCCCCTGC CTAGAATCCC CCAGTGAGGG GCTGTGGGCG TGGCTCAGTG
GTAGATCACT TGTTCTTTTA TGTTGCTAGG TCCTAGGCTT CATTTCTATT GCTGCAAAAC
CACCTCCCTC TACAGATAGT                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754787 MGP_WTSI_7_20281331 EVA_MGPV3 EVA_MGPV3 f SNP T T A A A A A T A T A A A A A A A A T A T A A A A T A A A T A T T A T A T A T A A T A A T A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229493793 SNP T T A A A A A T A T A A A A A A A A T A T A A A A T A A A T A T T A T A T A T A A T A A T A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754787 MGP_WTSI_7_20281331 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19429907 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 127 bp downstream
Cpgi18507 CpG island 18507 539 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1789 bp proximal
Gm71725 predicted gene, 71725 1136 bp upstream
Rr155346 regulatory region 155346 94 bp proximal
Rr167194 regulatory region 167194 493 bp proximal
Tssr2112 transcription start site region 2112 469 bp upstream
Tssr2113 transcription start site region 2113 494 bp upstream
Tssr2114 transcription start site region 2114 609 bp upstream
Tssr2115 transcription start site region 2115 645 bp upstream
Tssr2116 transcription start site region 2116 720 bp upstream
Tssr2117 transcription start site region 2117 742 bp upstream
Tssr2118 transcription start site region 2118 849 bp upstream
Tssr2119 transcription start site region 2119 858 bp downstream
Tssr2120 transcription start site region 2120 921 bp upstream
Tssr2121 transcription start site region 2121 953 bp upstream
Tssr2122 transcription start site region 2122 1673 bp downstream
Tssr64880 transcription start site region 64880 286 bp upstream
Tssr64881 transcription start site region 64881 338 bp upstream
Tssr64882 transcription start site region 64882 382 bp upstream
Tssr64883 transcription start site region 64883 420 bp upstream
Tssr64884 transcription start site region 64884 447 bp upstream
Tssr64885 transcription start site region 64885 526 bp upstream
Tssr64886 transcription start site region 64886 547 bp upstream
Tssr64887 transcription start site region 64887 579 bp upstream
Tssr64888 transcription start site region 64888 798 bp upstream
Tssr64889 transcription start site region 64889 892 bp upstream
Tssr64890 transcription start site region 64890 938 bp upstream
Tssr64891 transcription start site region 64891 961 bp upstream
Tssr64892 transcription start site region 64892 994 bp upstream
Tssr64893 transcription start site region 64893 1029 bp upstream
Tssr64894 transcription start site region 64894 1483 bp upstream
Tssr64895 transcription start site region 64895 1579 bp upstream
Tssr64896 transcription start site region 64896 1605 bp upstream
Tssr70973 transcription start site region 70973 310 bp downstream
Tssr70974 transcription start site region 70974 356 bp downstream
Tssr70975 transcription start site region 70975 384 bp downstream
Tssr70976 transcription start site region 70976 419 bp downstream
Tssr70977 transcription start site region 70977 467 bp downstream
Tssr70978 transcription start site region 70978 482 bp downstream
Tssr70979 transcription start site region 70979 506 bp downstream
Tssr70980 transcription start site region 70980 516 bp downstream
Tssr70981 transcription start site region 70981 537 bp downstream
Tssr70982 transcription start site region 70982 551 bp downstream
Tssr70983 transcription start site region 70983 584 bp downstream
Tssr70984 transcription start site region 70984 601 bp downstream
Tssr70985 transcription start site region 70985 666 bp downstream
Tssr70986 transcription start site region 70986 699 bp downstream
Tssr70987 transcription start site region 70987 729 bp downstream
Tssr70988 transcription start site region 70988 773 bp downstream
Tssr70989 transcription start site region 70989 812 bp downstream
Tssr70990 transcription start site region 70990 824 bp downstream
Tssr70991 transcription start site region 70991 869 bp downstream
Tssr70992 transcription start site region 70992 877 bp downstream
Tssr70993 transcription start site region 70993 886 bp downstream
Tssr70994 transcription start site region 70994 927 bp downstream
Tssr70995 transcription start site region 70995 932 bp downstream
Tssr70996 transcription start site region 70996 965 bp downstream
Tssr70997 transcription start site region 70997 999 bp downstream
Tssr70998 transcription start site region 70998 1061 bp downstream
Tssr70999 transcription start site region 70999 1079 bp downstream
Tssr71000 transcription start site region 71000 1522 bp downstream
Tssr71001 transcription start site region 71001 1552 bp downstream
Tssr71002 transcription start site region 71002 1612 bp downstream
Tssr71003 transcription start site region 71003 1630 bp downstream
Tssr71004 transcription start site region 71004 1658 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory