rs229494239 SNP Detail

Summary

• ID
  rs229494239
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:48663727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG GTGGGTAGGG AAGTGGGGGG
  K
  AGGGTATGGG GGACTTTTGG GATAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325174216	CHEV_16_48843477	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229494239					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48663727 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	Intron
Tssr138680	transcription start site region 138680	877 bp downstream
Tssr138681	transcription start site region 138681	784 bp downstream
Tssr138682	transcription start site region 138682	733 bp downstream
Tssr138683	transcription start site region 138683	703 bp downstream
Tssr138684	transcription start site region 138684	669 bp downstream
Tssr138685	transcription start site region 138685	628 bp downstream
Tssr138686	transcription start site region 138686	509 bp downstream
Tssr138687	transcription start site region 138687	467 bp downstream
Tssr138688	transcription start site region 138688	179 bp upstream
Tssr138689	transcription start site region 138689	807 bp upstream
Tssr138690	transcription start site region 138690	865 bp upstream
Tssr138691	transcription start site region 138691	902 bp upstream