rs229494689 SNP Detail

Summary

• ID
  rs229494689
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32421758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAAATT TTTAAAATAA
  AATAAATGAA AGAAAAAGAA ACCGGTCATA TTCACCACCT TTACTAAAGG ACAAAAACAA
  ATCTCACTGA CTTGTGGCTG AAACCTACTT TTGTGATTGT GTGTTGCTGG TCTGTTGACA
  GAAGGCATAC CTCTATGGGA CTTGAAGCAC ATGAGAGGAT CAAAATCGAT AGTGGAATGT
  M
  ACATTGTGGC ACTGATGTGC TATGGCCCAT TCACACAGAT TCCAATGGCC AAAGCCACTT
  TTGTCACTAA ACCTTAAGCC AGTGCAGCCA TCTCTGCTTT AATAGGCATC TGGCACAATG
  AGTCATTCCA AAAAAGAATG CAATCTGGGG CCAGCAAGAT GGCTGTAGAT AAAGTACTTA
  GCCACTGAGC CTGGTAGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320697919	CHEV_3_32266531	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229494689					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32421758 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	171 bp downstream
Cpgi13055	CpG island 13055	1250 bp distal
Rr374783	regulatory region 374783	1673 bp downstream
Rr374784	regulatory region 374784	1727 bp upstream
Rr574946	regulatory region 574946	1942 bp distal
Rr574948	regulatory region 574948	1441 bp distal
Rr574949	regulatory region 574949	1919 bp distal
Tssr32926	transcription start site region 32926	1987 bp upstream
Tssr32927	transcription start site region 32927	1918 bp upstream
Tssr32928	transcription start site region 32928	1696 bp upstream
Zmat3	zinc finger matrin type 3	1944 bp upstream