rs229497505 SNP Detail

Summary

• ID
  rs229497505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69870839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCTTCTT CGCTCACTTC ACAGCCCAGA
  ACGTGGACCT GCTCCCCACT AAGGCAGAGA TGAAGGAAAT ATATTGAAGA GTGGGGGTAC
  CGGCTCCCTT TCCGGGAAGG AGAGGAGAAA CTGTGGGCTA ACTCACCGAA GTGCAGATTT
  Y
  TTGATAAGAG CCTTCAGGAG ACTACGCCCT TCCCACTCCA CGGAATCTGG GGAGAGCCAA
  GGATGGGTGA GACCTACTGA GCCCTCAGGG CTCCGACCAC GACTTCCACC CCTAGCTGGG
  TATCCATCCC CAGCGGGTCC TCCAGGCTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323732456	CHEV_11_69793515	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229497505					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69870839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	66 bp proximal
Ctdnep1	CTD nuclear envelope phosphatase 1	1155 bp upstream
Elp5	elongator acetyltransferase complex subunit 5	within coordinates
Gm56228	predicted gene, 56228	679 bp upstream
Rr369263	regulatory region 369263	within coordinates
Rr402684	regulatory region 402684	503 bp upstream
Rr450182	regulatory region 450182	259 bp proximal
Rr450183	regulatory region 450183	653 bp proximal
Rr450184	regulatory region 450184	1229 bp proximal
Tssr102587	transcription start site region 102587	738 bp upstream
Tssr102588	transcription start site region 102588	755 bp upstream
Tssr102589	transcription start site region 102589	767 bp upstream
Tssr102590	transcription start site region 102590	817 bp upstream
Tssr102591	transcription start site region 102591	1026 bp upstream
Tssr102592	transcription start site region 102592	1114 bp upstream
Tssr102593	transcription start site region 102593	1242 bp upstream
Tssr102594	transcription start site region 102594	1319 bp upstream
Tssr102595	transcription start site region 102595	1368 bp upstream
Tssr102596	transcription start site region 102596	1447 bp upstream
Tssr102597	transcription start site region 102597	1462 bp upstream
Tssr102598	transcription start site region 102598	1478 bp upstream
Tssr102599	transcription start site region 102599	1509 bp upstream
Tssr108900	transcription start site region 108900	205 bp downstream
Tssr108901	transcription start site region 108901	220 bp downstream
Tssr108902	transcription start site region 108902	261 bp downstream
Tssr108903	transcription start site region 108903	455 bp downstream
Tssr108904	transcription start site region 108904	1215 bp downstream
Tssr108905	transcription start site region 108905	1229 bp downstream
Tssr108906	transcription start site region 108906	1268 bp downstream