rs229499260 SNP Detail

Summary

• ID
  rs229499260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11486891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGCAGCC CAGCCTGGAT
  AGTTGTGACC AAAAGCCGCT TGGCGATGGC GCATGCTCAG ATGCAGGGCT CGGAGTTTTT
  GCAGATTCCT AGGCTTCGGA TTTTAGCAGA CATTCTAAAG GAGATTGGGA AAAGGAGCCC
  GGCTTACTCC AGCCCCTGCT CTAGGATGGG CATGAGATAG GGCGGATGGT ATTCATTCAC
  Y
  ACGCCCTGAG ATTCTGGGGC CAAGGGACTG AAAGCTATGC CAGAGGAGAC AAGAACACGT
  GGGCTTGTTT TCCCCGCCGC TCTCAGTGTT AGCTCGGCCT TTGGCCACCT CTTGTCAGAT
  TGTGAAGAGA GCTGCAGAAA TCGCGGGAGA AGGCTTCCAG GTGGGCCGTA CGCACCGGTC
  CTTGCACCAC TGAGAGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385137462	MGP_WTSI_12_11443696	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229499260					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385137462	MGP_WTSI_12_11443696	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11486891 () rs orientation: forward

Symbol	Name	Function Class
4930511A02Rik	RIKEN cDNA 4930511A02 gene	1343 bp upstream
Cpgi4418	CpG island 4418	118 bp distal
Cpgi4419	CpG island 4419	1130 bp proximal
Rr462902	regulatory region 462902	1261 bp distal
Rr462903	regulatory region 462903	760 bp distal
Rr462904	regulatory region 462904	within coordinates
Rr462905	regulatory region 462905	823 bp proximal
Rr462906	regulatory region 462906	1324 bp proximal
Rr462907	regulatory region 462907	1852 bp proximal
Tssr3791	transcription start site region 3791	403 bp upstream
Tssr3792	transcription start site region 3792	350 bp upstream
Tssr3793	transcription start site region 3793	170 bp upstream
Tssr112802	transcription start site region 112802	1301 bp upstream
Tssr115745	transcription start site region 115745	1237 bp upstream
Tssr115746	transcription start site region 115746	381 bp upstream
Tssr115747	transcription start site region 115747	287 bp upstream
Tssr115748	transcription start site region 115748	272 bp upstream
Vsnl1	visinin-like 1	312 bp upstream