rs229502589 SNP Detail

Summary

• ID
  rs229502589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125992966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGGTGG CTCTCACATT
  GCGTCTCAAA AGGTTAGTAA CTTCTTTTTC TGTTTTGATA AGTGAAGGTA TAGTGGACTG
  GCTGACATTT AGAATGACTT TTGTTCTGCA TGCCTCTCTT TATTAAAACA TTTTTGCTTA
  AAGTCTAAAT TCAAATATCC ATGGTCTAAT TTCTACCTCA CTCTCACTAG TTCTGAAATT
  Y
  CTTTTCTGTA TCCAAATCAG GAATACCAGT TTGGCTCGAG TTGAGGTCTC CAAAACATTA
  AGGGACCTAT TCAGTCTGCT AAGAGTGACA GAAGGGATTC TCCTCTCCTC CTCTCCTCTC
  CCCTCCCCTC CCCTCCCCTC TCCTCTCCTC TCCCCTCCCC TCTCCTCCTC TCTCTTCCCT
  TCCCTTCCCC TTCTTCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355567325	MGP_WTSI_2_125976782	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229502589					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355567325	MGP_WTSI_2_125976782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125992966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	789 bp proximal
Dtwd1	DTW domain containing 1	1095 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	931 bp upstream
Rr564315	regulatory region 564315	507 bp proximal
Rr564316	regulatory region 564316	948 bp proximal
Rr564317	regulatory region 564317	1080 bp proximal
Rr564318	regulatory region 564318	1106 bp proximal
Tssr19931	transcription start site region 19931	1085 bp upstream
Tssr19932	transcription start site region 19932	1119 bp upstream
Tssr26028	transcription start site region 26028	910 bp downstream
Tssr26029	transcription start site region 26029	922 bp downstream
Tssr26030	transcription start site region 26030	969 bp downstream