rs229507079 SNP Detail

Summary

• ID
  rs229507079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46117834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCGGGG TTGCCTCTGT
  CAAGCTAGGC GACCCCGGGC GGGGAAGCCC AGCCCTCCCT CGAGCCCCCG CAGCGCTCAC
  CGCCCCCACC CGGGAGGGGG GACTGGAGAG GAGCGAAGAG GGCAGCGCGA CCCTCCGCGG
  CTGCCGCCTC CCCCTGCGCC ACACGGAAGG AGGAGGACCG GGCTCTATCC GCTCGCCGCC
  R
  CCGGACCGGC AGCAGCCGAA ACGGGGCGCC GCCGTTCTCC CCACCCGCGC CCCCCGCCCG
  GGCGCGCCCC CTCTCCTGGC GGCCGCCCAC CCAGCCCCTA TCTGCTGCCC TTGCTAGCCG
  CTCCTGCTCC CAGAGGGGGT CCCGAGCCGG GAGGCTGGAG CCGGGCACTA GTGTATGTAC
  ACACAGTCAC ACATACACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388491981	MGP_WTSI_13_46059727	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229507079					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388491981	MGP_WTSI_13_46059727	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46117834 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	866 bp upstream
Atxn1	ataxin 1	within coordinates
Cpgi5536	CpG island 5536	within coordinates
Gm56575	predicted gene, 56575	921 bp downstream
Rr403752	regulatory region 403752	541 bp upstream
Rr478835	regulatory region 478835	589 bp proximal
Rr478836	regulatory region 478836	946 bp proximal
Rr478837	regulatory region 478837	1863 bp proximal
Rr478838	regulatory region 478838	1928 bp proximal
Tssr119584	transcription start site region 119584	853 bp upstream
Tssr119585	transcription start site region 119585	1097 bp upstream
Tssr122339	transcription start site region 122339	639 bp upstream
Tssr122340	transcription start site region 122340	606 bp downstream
Tssr122341	transcription start site region 122341	1921 bp downstream