rs229507938 SNP Detail

Summary

• ID
  rs229507938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTAGTG GTGGTGATGA
  CAACCCATCA GAAATAATAA TTAGCAAAGG GCAGCCTTTG TCTCGAAGCA GTGAATGGGA
  CCTCAGCCCC CACAGGTGTG ATGCTGGGTG GAGACAGGTG GGCTTGACTC AAAGATCTCA
  CTATCCGAGG AAGAATTAGG GAACTCCAAG AGTGTATGGA ATGTTGTTTT GGTCTAACTC
  R
  GATTTCCCCT AATGCAGAAC AAGACTCATT TTCCCTGAGC ATCGTTTTCT ACATGTTTTT
  ATAATTAAAT AAGAACAGCA CATGCAGCAG GCACTATGCT AACTGCTTTA CAAATACTAC
  TTTTTCAAGG CAATATACAT GTATACAAGT ATATATGTGT ATACACACAC ATCTACACAA
  CCACCAGTCT AAGGAAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817657	CHEV_11_94938827	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229507938					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	228 bp distal
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	712 bp upstream
Rr454944	regulatory region 454944	1857 bp distal
Rr454945	regulatory region 454945	1075 bp distal
Rr454946	regulatory region 454946	1339 bp distal
Rr454947	regulatory region 454947	1073 bp distal
Rr454948	regulatory region 454948	810 bp distal
Rr454949	regulatory region 454949	542 bp distal
Rr454950	regulatory region 454950	142 bp distal
Rr454951	regulatory region 454951	123 bp proximal
Rr454952	regulatory region 454952	627 bp proximal
Rr454953	regulatory region 454953	1649 bp proximal
Tssr3652	transcription start site region 3652	897 bp upstream
Tssr104346	transcription start site region 104346	562 bp downstream
Tssr110254	transcription start site region 110254	924 bp upstream
Tssr110255	transcription start site region 110255	858 bp upstream
Tssr110256	transcription start site region 110256	791 bp upstream
Tssr110257	transcription start site region 110257	695 bp upstream