rs229509055 SNP Detail

Summary

• ID
  rs229509055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106936255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACACAG AAACAGTTTA
  TTTTTTTTTT TGTTTTAATC CCAGGTGTGG GGATGTGGGG CTGCTTTGAG CTGTCTAAAG
  CAGCTGACTA TGATTTGCCT CATGCCCTAG CAGAAGTGGT TTTTGTCAGC TGTAGATAGT
  TTCTGTGACA TTTGGAATTC TGGGAACTTC TCAGAGGGTA TATATAAATG CTAGAGCCCC
  R
  TCTTCAGGGA GGTTGGAGGC AAATTGTTAG TAGTCTGACC ATACACTGCA CCAAAACCTC
  CAAAATTGTG AGCTAAAACT CCTTCCATAT TTACCTCATT TTTCGTAGCA ATGACAGTTT
  AACATCATCT CTAAATACTG TATATCTTTT AAATAGCCAA ATCCACTTTC AAAAGGCCTA
  CATCAATTCT GTTTATTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375926454	MGP_WTSI_8_108733523	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229509055					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375926454	MGP_WTSI_8_108733523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106936255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	683 bp proximal
Prmt7	protein arginine N-methyltransferase 7	1431 bp upstream
Rr669119	regulatory region 669119	760 bp distal
Rr669120	regulatory region 669120	1140 bp proximal
Rr669121	regulatory region 669121	1300 bp proximal
Rr669122	regulatory region 669122	1411 bp proximal
Slc7a6os	solute carrier family 7, member 6 opposite strand	within coordinates
Tssr79236	transcription start site region 79236	521 bp upstream
Tssr79237	transcription start site region 79237	1337 bp upstream
Tssr79238	transcription start site region 79238	1370 bp upstream
Tssr79239	transcription start site region 79239	1393 bp upstream
Tssr82760	transcription start site region 82760	1301 bp downstream