rs229509738 SNP Detail

Summary

• ID
  rs229509738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86933063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTATCTC AGCTTGATGG
  GTTGTTGGAG ACTTCATTTT GTGCCTTGTG TTTGTGACAG ACTACTCTGA GACAGGTAAA
  AAGATAAGTA CTAGGCAAGT AATTCCTTTG CTTCAGCTTA TTGTTTTCAC TATAATATAG
  ATACATTATA TAAAGAGGTA TTTATGTTAT TAAACCTGTA ATGCCTTATA CAAAGTAGGT
  Y
  CCATTCCATT TTGCAGACTA GGACAATAGA GAGTCTGAAG TTATTGCAGC AGCTGGTCTG
  GGATCTAAAT CCAGTAAGTT TGGTTTGAGA GGTGGTGGTG CACACAAGCT AAGACTCCCA
  GACATGATGA TGTAGGGGGC CAAGATTTTC TATCAGCATC CCATTTTTTT GTTACATACA
  ACCTTGTATA TAAAGTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386770262	MGP_WTSI_12_88227239	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229509738					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386770262	MGP_WTSI_12_88227239	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86933063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4926	CpG island 4926	1165 bp distal
Cpgi4927	CpG island 4927	1754 bp proximal
Gm60793	predicted gene, 60793	471 bp downstream
Irf2bpl	interferon regulatory factor 2 binding protein-like	1491 bp upstream
Rr387576	regulatory region 387576	429 bp downstream
Rr470235	regulatory region 470235	1893 bp distal
Rr470236	regulatory region 470236	1001 bp distal
Rr470237	regulatory region 470237	1306 bp proximal
Rr470238	regulatory region 470238	1973 bp proximal
Tssr117132	transcription start site region 117132	1876 bp upstream
Tssr117133	transcription start site region 117133	1814 bp upstream
Tssr117134	transcription start site region 117134	1575 bp upstream
Tssr117135	transcription start site region 117135	1539 bp upstream
Tssr117136	transcription start site region 117136	1483 bp upstream
Tssr117137	transcription start site region 117137	1447 bp upstream
Tssr117138	transcription start site region 117138	1431 bp upstream
Tssr117139	transcription start site region 117139	403 bp upstream