rs229513091 SNP Detail

Summary

• ID
  rs229513091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAACTA GAGGCAAGGG
  GCAAGACAAA ATGTTTAAAC TTTAAATTTT TCCTATCAAA AAAAATCACT TTTTCATCCT
  GACTGCCCAG TGTAAACCCC GAGGCACCTG TGTTATGCCC ACTGTGGGAA ATCTCCTGTT
  GTCAAAGAAC TCAAGGCACA CTACGGTAGC AGCAATGATA ATGGTTGCTG CTGTCCCGGC
  R
  GTTTGCCCTG GGTATGTCAG CCCAATTTGA GTGAACTTAG AGGAGTCAGC AGACACAAAC
  TGTCTTCCTA AGAGAGACTG CCCACATCAC CAAAGGGTCC TTAGCTAGAT AGAGCAAGGT
  ATATAAAAGC CTTACTGGTC TAGCACAAAG GAGGAAGAAC TAGCTCCTAA TATCCTTCAT
  GTTGTCACTG AATGTAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	C57BL/6J	DBA/1J	FVB/NJ	SJL/J	SPRET/EiJ	ST/bJ
ss350399196	MGP_WTSI_1_90160042	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	C57BL/6J	DBA/1J	FVB/NJ	SJL/J	SPRET/EiJ	ST/bJ
rs229513091					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399196	MGP_WTSI_1_90160042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191189 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1178 bp downstream
Tssr12870	transcription start site region 12870	1351 bp downstream