rs229519935 SNP Detail

Summary

• ID
  rs229519935
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24025113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCGTAATC CTCTTTAAAA
  ATCAATAGAT TTCAAAAGGT TATTTATCAG TCATGGAATG TTAGTCCTGA CACTAAGTAG
  AGGTGGGCAA GAAATGGTTG TTGAAGTGGC TAAGTCTATC CGAAATTAAG ATAACTGGCC
  TCTGAACTTA TACTATTTCA TCCTTTCCAC ACTATTACAG TTCTAACCAG TGAACCAGAC
  K
  TTGTAGACTC AGGGGCCTTC CAGGAACTCT CACAGACATT GCGAAGATGT ATGCCCTGTC
  CCACAGAAAG TATTGATCTT TTCCTTAGTC AGCTATGCTT CAGCCATGTG ACTACCACAA
  TTTTCTGAAG AAGTGCAGCC TTTCATAATC AAATTCATTC ATTGCCCAGA TTCTCATCCA
  GATAAGTTAG GAGACAGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292306	CHEV_13_23932999	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229519935					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24025113 () rs orientation: forward

Symbol	Name	Function Class
Rr475960	regulatory region 475960	1671 bp distal
Rr475961	regulatory region 475961	1588 bp distal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	within coordinates
Tssr4011	transcription start site region 4011	1502 bp downstream
Tssr4012	transcription start site region 4012	1398 bp downstream
Tssr118875	transcription start site region 118875	1688 bp downstream
Tssr118876	transcription start site region 118876	1660 bp downstream
Tssr118877	transcription start site region 118877	1543 bp downstream
Tssr118878	transcription start site region 118878	1510 bp downstream