rs229520872 SNP Detail

Summary

• ID
  rs229520872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58278957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cggatggtt gtgagccacc atgtggttgc
  tgggatttga actctggacc ttcggaagag cagtcgggtg ctcttaccca ctgagccatc
  tcaccagccc TAAACCTATT TTTAAGAGCT ATTTTAGGAC TACACTAAAG CTGGGTTAAA
  R
  GCACAGACAT CTCCCATGTA CCTTTGCTGC CTGGCTCACG TGTAATTGCT ATCATTGTCA
  AAGCTCTCAC CACAGTggtg agcctacaca ggtgcttact gttacctaag tccccagttt
  acctcagggt cactcctgat gtagtgcatt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690069	CHEV_11_58201633	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229520872					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58278957 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101739	transcription start site region 101739	1370 bp downstream
Tssr101740	transcription start site region 101740	1325 bp downstream
Tssr101741	transcription start site region 101741	1307 bp downstream
Tssr101742	transcription start site region 101742	1957 bp upstream
Tssr108157	transcription start site region 108157	1327 bp upstream
Tssr108158	transcription start site region 108158	1295 bp upstream