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rs229526030 SNP Detail
Summary
  • ID
    rs229526030
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:140427925 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGTCAGTTTC AGGCCAGCCT
GGGCTACATG AGACGGAAAC AAAACCCCAA AGAAAAACAT TTGTCAGAAG AGAAAGTGAC
ACTGAGATGC AAACCTTCCC CTAGTTCCAA CCAAGCCGAT CGTGCACGTG GCTTGTCGGG
TCCTGTGAGG GGGGCCCTGT CGACTCCTCA GCCTTGACCC CAGCACCTCT GGCCACTTCT
Y
TTCCCGGATT CCTAGACCCT GCACTGTCCC ACGGGGTAGG GGAAAGGTTT CCTCTCCCAC
TTCTGCCAGG TCAGATTCTT TACAATTTTA AAACTCAGCT CTCCCAGGGA ACGCCTTCCT
TGATCCTGGA ACCCGGTAAG TACCATGCTT TCAGTAATTT CTTAATCTTT CCTCTTACTT
CGCCTTCCAA CTGGGCAGAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363501313 MGP_WTSI_4_140256529 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229526030 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss363501313 MGP_WTSI_4_140256529 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:140427925 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi15194 CpG island 15194 635 bp distal
Cpgi15195 CpG island 15195 451 bp proximal
Gm69527 predicted gene, 69527 within coordinates
Gm69529 predicted gene, 69529 144 bp downstream
Rcc2 regulator of chromosome condensation 2 within coordinates
Rr377298 regulatory region 377298 within coordinates
Rr603517 regulatory region 603517 731 bp distal
Rr603518 regulatory region 603518 63 bp distal
Rr603519 regulatory region 603519 within coordinates
Rr603520 regulatory region 603520 646 bp proximal
Rr603521 regulatory region 603521 796 bp proximal
Tssr39970 transcription start site region 39970 732 bp downstream
Tssr39971 transcription start site region 39971 659 bp downstream
Tssr39972 transcription start site region 39972 639 bp downstream
Tssr39973 transcription start site region 39973 616 bp downstream
Tssr39974 transcription start site region 39974 268 bp downstream
Tssr39975 transcription start site region 39975 129 bp downstream
Tssr39976 transcription start site region 39976 85 bp downstream
Tssr39977 transcription start site region 39977 1 bp downstream
Tssr39978 transcription start site region 39978 812 bp upstream
Tssr39979 transcription start site region 39979 833 bp upstream
Tssr39980 transcription start site region 39980 852 bp upstream
Tssr39981 transcription start site region 39981 896 bp upstream
Tssr39982 transcription start site region 39982 908 bp upstream
Tssr39983 transcription start site region 39983 994 bp upstream
Tssr39984 transcription start site region 39984 1219 bp upstream
Tssr39985 transcription start site region 39985 1281 bp upstream
Tssr39986 transcription start site region 39986 1322 bp upstream
Tssr39987 transcription start site region 39987 1467 bp upstream
Tssr39988 transcription start site region 39988 1563 bp upstream
Tssr39989 transcription start site region 39989 1602 bp upstream
Tssr44270 transcription start site region 44270 964 bp upstream
Tssr44271 transcription start site region 44271 931 bp upstream
Tssr44272 transcription start site region 44272 791 bp upstream
Tssr44273 transcription start site region 44273 455 bp downstream
Tssr44274 transcription start site region 44274 1784 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory