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rs229538914 SNP Detail
Summary
  • ID
    rs229538914
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr8:85432909 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTTAAAAAT AATTTTCTCT
    CGTCCTTTTC CTTTTGATCT TGTGTTGGTT TTTTTTTTTT AATGTCGAGG TGTTTTTAAA
    CGTTTTCTTC AGCCCTCCCA CCGAAACCGA ACGACGAAAC AAATTTAAAC CCCAGATTAT
    CCTCGTCAAC GCAGGAAAAA AGGCAAAACA AAAAAAAAAA AACAAAAAAA AAACCAACCA
    R
    CCAAACCAAC AAACAAAAAC CCAGAAAACT ATCAAAAAGG AAAACAAACA AAAAAAAAAA
    CAAAAAAAAG GAAAACACTC AGCTTTCATC CCCGCTAAGG GCAGGGCAGG CCCAGTTCTT
    TTAGCGTCCC CAGAGCCGCG AGGACATTAC AACAAAAATA GAATTTTTTT TCTTAATCTC
    TTAACATACA AAGATAGGAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss375404563 MGP_WTSI_8_87230179 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229538914 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss375404563 MGP_WTSI_8_87230179 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:85432909 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi20708 CpG island 20708 1688 bp distal
Cpgi20709 CpG island 20709 330 bp distal
Cpgi20710 CpG island 20710 297 bp proximal
Lyl1 lymphoblastomic leukemia 1 1340 bp downstream
Nfix nuclear factor I/X within coordinates
Rr187001 regulatory region 187001 within coordinates
Rr368567 regulatory region 368567 1654 bp downstream
Tssr82117 transcription start site region 82117 1142 bp upstream
Tssr82118 transcription start site region 82118 1105 bp upstream
Tssr82119 transcription start site region 82119 1078 bp upstream
Tssr82120 transcription start site region 82120 1002 bp upstream
Tssr82121 transcription start site region 82121 453 bp upstream
Tssr82122 transcription start site region 82122 220 bp upstream
Tssr82123 transcription start site region 82123 71 bp upstream
Tssr82124 transcription start site region 82124 26 bp upstream
Tssr82125 transcription start site region 82125 31 bp downstream
Tssr82126 transcription start site region 82126 220 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory