rs229548590 SNP Detail

Summary

• ID
  rs229548590
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126931514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGACAT TTTTTATTGT
  TGGTTTGGTT TGGTTTTGTG TAGACACAGT TTTTTTTCTG TGTAGCCCTG GCTTTCCTGA
  AACTCACTCT GTAGACCAGG CTGGCCTTGA ACTCAGAGAT CCACCTGCCT CTCCCTCCTG
  AGTGCTGGGG TTACAGGTGA GCCACCATCC CACAGCTCTA CAGGAGGTTT TTTTTTTTTT
  K
  TTTTGTTTTT TGTTTTTTGA GAGTATCAGC ATGTAGGCCA AATGGCTAAA ACTCAAGATC
  CTCTGGCCTC TCCTGCTGAA TGCTGAGATT ATGAGCTCGG GCAACTATGC CTGCCTGAAA
  CATGGCATTC ACATGAGTGG AAAGAATAAA TTATCAAACT TAAAGCTTTT TAAAATATTC
  ACAAGATTTA TAAAACCATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
ss373085968	MGP_WTSI_7_134475856	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	T	T	G	T	G	G	T	G	G	T	G	T	T	T	T	G	T	G	G	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
rs229548590					SNP	T	T	T	G	T	T	G	T	G	G	T	G	G	T	G	T	T	T	T	G	T	G	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373085968	MGP_WTSI_7_134475856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126931514 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	12 bp upstream
Tssr69201	transcription start site region 69201	1228 bp upstream
Tssr69202	transcription start site region 69202	1260 bp upstream
Tssr69203	transcription start site region 69203	1308 bp upstream
Tssr69204	transcription start site region 69204	1439 bp upstream