rs229549533 SNP Detail

Summary

• ID
  rs229549533
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31147832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCGACAG GAGCTGGGGC
  GGAGGCGGTG ATGAGAGGTG ACATTTGTTA GACCTATTGT GGGGGTTAAA AAAAAAAGGA
  CGAAAAATCC TCAAGCACAA AAGTATTCCC AATTGGACAA CTGCAAATGT AGACCCAAAC
  ATGAGTAACC CCGAAGCGGT AAAATAAACC CGGCGAGAAA AGGAAAAAAA AAAAAAAAAA
  G
  AAAAAAAAAA GGTGGGGTGG GGGTGGGGTG CGCCACCGTC GCCGAAGCTC GAGTTCCCTA
  AGTCTGCGCA GTGCTACTCG CTGCGCTATT TCAGTTCCTG ATCCTGCGGT GGGGTGGAGA
  AAAGGGGATT TCTTGGTGTT TCGAAATATG ACGGGCTAGC TTCACAGAGT TGAATATTCG
  AGCTATCCTG GATACGTTGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CE/J	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ
ss357433246	MGP_WTSI_3_30992605	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CE/J	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ
rs229549533					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433246	MGP_WTSI_3_30992605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31147832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	23 bp proximal
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	214 bp upstream
Rr397631	regulatory region 397631	within coordinates
Rr574879	regulatory region 574879	within coordinates
Rr574880	regulatory region 574880	594 bp proximal
Rr574881	regulatory region 574881	885 bp proximal
Rr574882	regulatory region 574882	1453 bp proximal
Rr574883	regulatory region 574883	1484 bp proximal
Skil	SKI-like	1427 bp upstream
Tssr28705	transcription start site region 28705	1954 bp downstream
Tssr28706	transcription start site region 28706	209 bp upstream
Tssr28707	transcription start site region 28707	334 bp upstream
Tssr28708	transcription start site region 28708	983 bp upstream
Tssr28709	transcription start site region 28709	1011 bp upstream
Tssr28710	transcription start site region 28710	1036 bp upstream
Tssr28711	transcription start site region 28711	1254 bp upstream
Tssr28712	transcription start site region 28712	1278 bp upstream
Tssr28713	transcription start site region 28713	1369 bp upstream