rs229549778 SNP Detail

Summary

• ID
  rs229549778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127723034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTCATGCG AGAGTGTGGG ACTTGTGGGC
  TCTAAACAAG AGCTTGATAC ACACCAGGCG GTGGGCTGAG TGTGATGCTT ACACCCCCAG
  GGCATCCCCA ACCTGAGCAT CAAAGACCGT GAGGAACTAT GGCTCTTGGC CAAGTACAGT
  R
  GATGCCTTAG GTGCTTCCAA GGGGCAGGCC TCCAGAGCAG GACAAGTCTA AGTGAACTTA
  GGCCTCAGCT ACCTGACAGG CACAGAGCGT GGTTTTCCAG TGAGTGACCA CCTTACTCCA
  GAAAGGAGAA GGTAAAGAGA GCCTTCCAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323530327	CHEV_10_127324221	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229549778					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127723034 () rs orientation: forward

Symbol	Name	Function Class
Rdh7	retinol dehydrogenase 7	within coordinates
Rr226506	regulatory region 226506	within coordinates
Rr226507	regulatory region 226507	1358 bp proximal
Tssr99825	transcription start site region 99825	1931 bp upstream
Tssr99826	transcription start site region 99826	1479 bp downstream
Tssr99827	transcription start site region 99827	1523 bp downstream