rs229556023 SNP Detail

Summary

• ID
  rs229556023
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156768025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTAGGTGG CCTACTTAAA CTTAGCACCA
  TTTGATGCAG TGTGACTTAG TGGAAGGTTT TCAGTGAGCC ACCTTGGTGT AATCATTAGG
  TCATTCGGGA ATAGATGCGA TCCTTTTCTA GGCAATGTGC AGTGGAGGGT GGAGGGACAG
  W
  TCTATAGCAG CACTGAGTGT AGATTGTGAA GGGACCAAAT TCGTTTTGAT TTCCTTTTTC
  CCTATAATAA CTAATCAAAA CAGTGGATTC TTTTATGCAG AAGAAAGTTA AACACTGTCC
  CTTTTGACCA CTGTTCCCTT CTGTGGAGAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320073083	CHEV_1_158870586	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229556023					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156768025 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	260 bp downstream
Cpgi904	CpG island 904	226 bp distal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	829 bp upstream
Rr19959	regulatory region 19959	976 bp proximal
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	1456 bp downstream
Tssr9581	transcription start site region 9581	766 bp downstream
Tssr14475	transcription start site region 14475	1646 bp upstream
Tssr14476	transcription start site region 14476	1602 bp upstream
Tssr14477	transcription start site region 14477	906 bp upstream
Tssr14478	transcription start site region 14478	840 bp upstream
Tssr14479	transcription start site region 14479	798 bp upstream
Tssr14480	transcription start site region 14480	415 bp upstream