rs229556268 SNP Detail

Summary

• ID
  rs229556268
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGCTG GTTCTTTCAT
  GTCCTTGTCA CCTCCTATGG CTACAATACA ACAATGACCA GAACCAAGTT GAGATGGGAA
  GGGTTTATTG CACCTTCCAG GACACAATGC AGGGTCAAGG TGAGCAAGCC AGAAAGCAGA
  CTTCCTCCAC GGTCTCTACT CTGCTCCTGC CTTGCGCTCC TTCTGCATTG GCACCCTTGA
  S
  AAAAGCCTCC CCTAGTCAGC CTTGGTCAGC ATTTTATCAC AGCAGGGGAA GAAACTAGGA
  CCCTTGACAA AGTCAATAAA ACAGGTAAAG CTCGAGGCAA CTGACACAAA CGGTCATCTC
  AGAAGAAAAG AGGAGCCGGG CGTGGTGGTG CACTCCTTTA AGCCCAGCAC TCGGGAGGCA
  GAGGCAGGCA GATTTCTAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss382237248	MGP_WTSI_11_3073668	EVA_MGPV3	EVA_MGPV3	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs229556268					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237248	MGP_WTSI_11_3073668	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1084 bp distal
Cpgi2458	CpG island 2458	within coordinates
Rr441481	regulatory region 441481	1215 bp distal
Rr441483	regulatory region 441483	1449 bp distal
Rr441484	regulatory region 441484	715 bp distal
Rr441485	regulatory region 441485	within coordinates
Rr441486	regulatory region 441486	308 bp proximal
Rr441487	regulatory region 441487	1513 bp proximal
Rr441488	regulatory region 441488	1944 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	868 bp upstream
Tssr106449	transcription start site region 106449	336 bp upstream