rs229557642 SNP Detail

Summary

• ID
  rs229557642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23707115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAAACGG GGAGGTGGAT
  GTGGGGATAG TTTTGCCTTT CTGAGCCTTC CATCTTGAGA GAAGCCAGGC ACAATGGTGT
  CTGCCTGTAA TCCCAGCACT TGGTGAGTAA AAAGAGGTGG ATTAGAAGTT CAAGAGCATC
  CTTGGATACA TAGGAAATTC TAGGCCAGGC CCAGTCTACA TAAAGAGGGA AAGAGGGAGA
  R
  GGAGGGAGGG AGGGAGGGAT AGAGGGAGAT AGAGCTCAGT CAAGGAAGGC TTAGCTACTC
  CGTGAATCTG AGGTTTTGGA GTCGTTGACA TAGCTGTATT CTTATCAGTG ATACATATTC
  GCTAGATTTT CATCTAATCC CGTACCACTT TCCCTGTGTC CTTTATAGAA ACCTTACAGA
  CATGGGCCCC TGAGCACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289684	CHEV_13_23614814	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229557642					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23707115 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	329 bp downstream
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	994 bp downstream
Rr271078	regulatory region 271078	1486 bp proximal
Rr281117	regulatory region 281117	714 bp distal
Rr281118	regulatory region 281118	1885 bp proximal