rs229558113 SNP Detail

Summary

• ID
  rs229558113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44129921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT CATCTTTTCC TGCAGCTCCA
  R
  TTCTCCCATC ATGTTTCTCT TGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322198943	CHEV_7_51735867	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229558113					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44129921 () rs orientation: forward

Symbol	Name	Function Class
Tssr2227	transcription start site region 2227	1477 bp downstream
Tssr2228	transcription start site region 2228	414 bp downstream
Tssr2229	transcription start site region 2229	139 bp downstream
Tssr2230	transcription start site region 2230	36 bp upstream
Tssr2231	transcription start site region 2231	169 bp upstream
Tssr2232	transcription start site region 2232	344 bp upstream
Tssr2233	transcription start site region 2233	377 bp upstream
Tssr2234	transcription start site region 2234	536 bp upstream
Tssr2235	transcription start site region 2235	1170 bp upstream
Tssr66279	transcription start site region 66279	1970 bp downstream
Tssr66280	transcription start site region 66280	1948 bp downstream
Tssr66281	transcription start site region 66281	1908 bp downstream
Tssr66282	transcription start site region 66282	1891 bp downstream
Tssr66283	transcription start site region 66283	1877 bp downstream
Tssr66284	transcription start site region 66284	1865 bp downstream
Tssr66285	transcription start site region 66285	1851 bp downstream
Tssr66286	transcription start site region 66286	1812 bp downstream
Tssr66287	transcription start site region 66287	1776 bp downstream
Tssr66288	transcription start site region 66288	1751 bp downstream
Tssr66289	transcription start site region 66289	1669 bp downstream
Tssr66290	transcription start site region 66290	1631 bp downstream
Tssr66291	transcription start site region 66291	1605 bp downstream
Tssr66292	transcription start site region 66292	1573 bp downstream
Tssr66293	transcription start site region 66293	1551 bp downstream
Tssr66294	transcription start site region 66294	1527 bp downstream
Tssr66295	transcription start site region 66295	1262 bp downstream
Tssr66296	transcription start site region 66296	1091 bp downstream
Tssr66297	transcription start site region 66297	1067 bp downstream
Tssr66298	transcription start site region 66298	1012 bp downstream
Tssr66299	transcription start site region 66299	992 bp downstream
Tssr66300	transcription start site region 66300	969 bp downstream
Tssr66301	transcription start site region 66301	953 bp downstream
Tssr66302	transcription start site region 66302	912 bp downstream
Tssr66303	transcription start site region 66303	903 bp downstream
Tssr66304	transcription start site region 66304	898 bp downstream
Tssr66305	transcription start site region 66305	859 bp downstream
Tssr66306	transcription start site region 66306	805 bp downstream
Tssr66307	transcription start site region 66307	756 bp downstream
Tssr66308	transcription start site region 66308	739 bp downstream
Tssr66309	transcription start site region 66309	689 bp downstream
Tssr66310	transcription start site region 66310	620 bp downstream
Tssr66311	transcription start site region 66311	597 bp downstream
Tssr66312	transcription start site region 66312	578 bp downstream
Tssr66313	transcription start site region 66313	568 bp downstream
Tssr66314	transcription start site region 66314	550 bp downstream
Tssr66315	transcription start site region 66315	543 bp downstream
Tssr66316	transcription start site region 66316	478 bp downstream
Tssr66317	transcription start site region 66317	462 bp downstream
Tssr66318	transcription start site region 66318	421 bp downstream
Tssr66319	transcription start site region 66319	393 bp downstream
Tssr66320	transcription start site region 66320	369 bp downstream
Tssr66321	transcription start site region 66321	345 bp downstream
Tssr66322	transcription start site region 66322	329 bp downstream
Tssr66323	transcription start site region 66323	291 bp downstream
Tssr66324	transcription start site region 66324	238 bp downstream
Tssr66325	transcription start site region 66325	197 bp downstream
Tssr66326	transcription start site region 66326	187 bp downstream
Tssr66327	transcription start site region 66327	167 bp downstream
Tssr66328	transcription start site region 66328	149 bp downstream
Tssr66329	transcription start site region 66329	110 bp downstream
Tssr66330	transcription start site region 66330	97 bp downstream
Tssr66331	transcription start site region 66331	83 bp downstream
Tssr66332	transcription start site region 66332	50 bp downstream
Tssr66333	transcription start site region 66333	15 bp downstream
Tssr66334	transcription start site region 66334	9 bp downstream
Tssr66335	transcription start site region 66335	within coordinates
Tssr66336	transcription start site region 66336	5 bp upstream
Tssr66337	transcription start site region 66337	23 bp upstream
Tssr66338	transcription start site region 66338	79 bp upstream
Tssr66339	transcription start site region 66339	130 bp upstream
Tssr66340	transcription start site region 66340	175 bp upstream
Tssr66341	transcription start site region 66341	220 bp upstream
Tssr66342	transcription start site region 66342	282 bp upstream
Tssr66343	transcription start site region 66343	314 bp upstream
Tssr66344	transcription start site region 66344	459 bp upstream
Tssr66345	transcription start site region 66345	492 bp upstream
Tssr66346	transcription start site region 66346	548 bp upstream
Tssr66347	transcription start site region 66347	586 bp upstream
Tssr66348	transcription start site region 66348	627 bp upstream
Tssr66349	transcription start site region 66349	651 bp upstream
Tssr66350	transcription start site region 66350	679 bp upstream
Tssr66351	transcription start site region 66351	687 bp upstream
Tssr66352	transcription start site region 66352	723 bp upstream
Tssr66353	transcription start site region 66353	797 bp upstream
Tssr66354	transcription start site region 66354	811 bp upstream
Tssr66355	transcription start site region 66355	838 bp upstream
Tssr66356	transcription start site region 66356	855 bp upstream
Tssr66357	transcription start site region 66357	869 bp upstream
Tssr66358	transcription start site region 66358	881 bp upstream
Tssr66359	transcription start site region 66359	907 bp upstream
Tssr66360	transcription start site region 66360	919 bp upstream
Tssr66361	transcription start site region 66361	945 bp upstream
Tssr66362	transcription start site region 66362	977 bp upstream
Tssr66363	transcription start site region 66363	994 bp upstream
Tssr66364	transcription start site region 66364	1027 bp upstream
Tssr66365	transcription start site region 66365	1047 bp upstream
Tssr66366	transcription start site region 66366	1067 bp upstream
Tssr66367	transcription start site region 66367	1095 bp upstream
Tssr66368	transcription start site region 66368	1117 bp upstream
Tssr66369	transcription start site region 66369	1151 bp upstream
Tssr66370	transcription start site region 66370	1193 bp upstream
Tssr66371	transcription start site region 66371	1618 bp upstream
Tssr66372	transcription start site region 66372	1781 bp upstream
Tssr72201	transcription start site region 72201	1546 bp upstream
Tssr72202	transcription start site region 72202	689 bp upstream
Tssr72203	transcription start site region 72203	309 bp upstream
Tssr72204	transcription start site region 72204	278 bp downstream