rs229559227 SNP Detail

Summary

• ID
  rs229559227
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143654275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT AACTGTGTAG ATCACAGAGG
  W
  GCTGGGCAAA AGGAAGCATG ATCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320010610	CHEV_1_145625667	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229559227					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143654275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi837	CpG island 837	477 bp distal
Gm25663	predicted gene, 25663	391 bp upstream
Gm29170	predicted gene 29170	within coordinates
Ro60	Ro60, Y RNA binding protein	1481 bp upstream
Rr396352	regulatory region 396352	1163 bp downstream
Rr396353	regulatory region 396353	169 bp downstream
Rr419943	regulatory region 419943	1480 bp distal
Rr419944	regulatory region 419944	885 bp distal
Rr419945	regulatory region 419945	1372 bp distal
Rr419946	regulatory region 419946	176 bp distal
Tssr9196	transcription start site region 9196	1210 bp downstream
Tssr9197	transcription start site region 9197	1192 bp downstream
Tssr14094	transcription start site region 14094	1498 bp upstream
Uchl5	ubiquitin carboxyl-terminal esterase L5	within coordinates