rs229561217 SNP Detail

Summary

• ID
  rs229561217
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115566440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATCACA AAGGAGAAAG
  AGTGCAGGAT TGGTCCTGCA CACAGGTGGC TACTGAGTCA ACCTGGGTGG ATGTAAGGAA
  GGGAGGAGAT AGGGATGCGG GGTGGGGGTG GGGTAAAGTG GTAGGGTGGG GCTTGTAAAG
  GCACCTTAGC CTCCTGTTTG GACCATTTCT ATCGTGGTTT CAACCAGGGA AGTGAAGACA
  W
  CCCTTGGTCT TGAGGGAGGA GGGTGAATCT GCCTCTTGTC ATATATAAGG GACTTTCTTG
  GTCTTCCCAG GCTGGAGAGA AGGAGTTTAT GGGGGTGAAT GAAGAGACAT GGGGTTCAAG
  TACTAGGAGG TGATGCTAAA GAGCCAGGAG TTAGAGGGAA GAAGACAGGA GTTTGGCTTC
  ATAGAAGGAA ATTATTTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366356317	MGP_WTSI_5_115878390	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229561217					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366356317	MGP_WTSI_5_115878390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115566440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	639 bp proximal
Gm43231	predicted gene 43231	within coordinates
Msi1	musashi RNA-binding protein 1	1294 bp upstream
Rr618242	regulatory region 618242	300 bp proximal
Rr618243	regulatory region 618243	1113 bp proximal
Tssr48228	transcription start site region 48228	1124 bp upstream
Tssr48229	transcription start site region 48229	1141 bp upstream
Tssr48230	transcription start site region 48230	1168 bp upstream
Tssr48231	transcription start site region 48231	1204 bp upstream
Tssr48232	transcription start site region 48232	1241 bp upstream
Tssr48233	transcription start site region 48233	1315 bp upstream
Tssr48234	transcription start site region 48234	1339 bp upstream
Tssr48235	transcription start site region 48235	1378 bp upstream
Tssr48236	transcription start site region 48236	1563 bp upstream
Tssr48237	transcription start site region 48237	1936 bp upstream
Tssr52797	transcription start site region 52797	1114 bp downstream