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rs229564148 SNP Detail
Summary
  • ID
    rs229564148
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93351365 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGCAAGAGA GGCAGGAACT
CAAGGGCAAG GGCCAAACAG AAGAGAGAAG GCTGCAGAAG CGCAGGCAAG AAGAGCTACG
CGAACCCCTG CTAAGGCGCG ATCTGGAGTT GAGGCGCGAA CAAGAGCTAA GGCGCGAGCA
GGAGTTGAGG CAGGAACAGA GGCGCGAGCA GGAGCTAAGG CGCGAGCAGG AGCTGAGGCA
R
GAGCTGAGGC GCGAGCAGGA GCTGAATCGA AGGCAGGAGC TGAGGCGCGA ACAAGAGCTA
AGGCGCGAGC AGGAGCTGAG GCAGGAGCTG AGGCGCGAGC AGGAGCTAAG GCGCGAGCAG
GAGTTGAGGC AGGAACTGAG GCGCGAGCAA GAGCTAAGGC GCGAGCAGGA GTTGAGGCAG
GAACTGAGGC GCGAGCAAGA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
RF/J
RIIIS/J
SEA/GnJ
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876317 MGP_WTSI_3_93247980 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
RF/J
RIIIS/J
SEA/GnJ
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229564148 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876317 MGP_WTSI_3_93247980 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351365 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 628 bp downstream
Tssr961 transcription start site region 961 52 bp downstream
Tssr962 transcription start site region 962 1065 bp upstream
Tssr963 transcription start site region 963 1102 bp upstream
Tssr964 transcription start site region 964 1198 bp upstream
Tssr30345 transcription start site region 30345 1669 bp downstream
Tssr30346 transcription start site region 30346 1644 bp downstream
Tssr30347 transcription start site region 30347 585 bp downstream
Tssr30348 transcription start site region 30348 565 bp downstream
Tssr30349 transcription start site region 30349 553 bp downstream
Tssr30350 transcription start site region 30350 509 bp downstream
Tssr30351 transcription start site region 30351 485 bp downstream
Tssr30352 transcription start site region 30352 435 bp downstream
Tssr30353 transcription start site region 30353 416 bp downstream
Tssr30354 transcription start site region 30354 401 bp downstream
Tssr30355 transcription start site region 30355 382 bp downstream
Tssr30356 transcription start site region 30356 328 bp downstream
Tssr30357 transcription start site region 30357 273 bp downstream
Tssr30358 transcription start site region 30358 155 bp downstream
Tssr30359 transcription start site region 30359 129 bp downstream
Tssr30360 transcription start site region 30360 99 bp downstream
Tssr30361 transcription start site region 30361 219 bp upstream
Tssr30362 transcription start site region 30362 233 bp upstream
Tssr30363 transcription start site region 30363 376 bp upstream
Tssr30364 transcription start site region 30364 447 bp upstream
Tssr30365 transcription start site region 30365 482 bp upstream
Tssr30366 transcription start site region 30366 534 bp upstream
Tssr30367 transcription start site region 30367 578 bp upstream
Tssr30368 transcription start site region 30368 595 bp upstream
Tssr30369 transcription start site region 30369 608 bp upstream
Tssr30370 transcription start site region 30370 615 bp upstream
Tssr30371 transcription start site region 30371 635 bp upstream
Tssr30372 transcription start site region 30372 648 bp upstream
Tssr30373 transcription start site region 30373 699 bp upstream
Tssr30374 transcription start site region 30374 717 bp upstream
Tssr30375 transcription start site region 30375 730 bp upstream
Tssr30376 transcription start site region 30376 756 bp upstream
Tssr30377 transcription start site region 30377 778 bp upstream
Tssr30378 transcription start site region 30378 811 bp upstream
Tssr30379 transcription start site region 30379 829 bp upstream
Tssr30380 transcription start site region 30380 909 bp upstream
Tssr30381 transcription start site region 30381 927 bp upstream
Tssr30382 transcription start site region 30382 986 bp upstream
Tssr30383 transcription start site region 30383 997 bp upstream
Tssr30384 transcription start site region 30384 1006 bp upstream
Tssr30385 transcription start site region 30385 1022 bp upstream
Tssr30386 transcription start site region 30386 1043 bp upstream
Tssr30387 transcription start site region 30387 1134 bp upstream
Tssr30388 transcription start site region 30388 1160 bp upstream
Tssr30389 transcription start site region 30389 1174 bp upstream
Tssr30390 transcription start site region 30390 1246 bp upstream
Tssr30391 transcription start site region 30391 1265 bp upstream
Tssr30392 transcription start site region 30392 1283 bp upstream
Tssr30393 transcription start site region 30393 1300 bp upstream
Tssr30394 transcription start site region 30394 1320 bp upstream
Tssr30395 transcription start site region 30395 1345 bp upstream
Tssr30396 transcription start site region 30396 1394 bp upstream
Tssr30397 transcription start site region 30397 1411 bp upstream
Tssr30398 transcription start site region 30398 1486 bp upstream
Tssr30399 transcription start site region 30399 1533 bp upstream
Tssr34352 transcription start site region 34352 174 bp upstream
Tssr34353 transcription start site region 34353 168 bp upstream
Tssr34354 transcription start site region 34354 117 bp upstream
Tssr34355 transcription start site region 34355 20 bp upstream
Tssr34356 transcription start site region 34356 647 bp downstream
Tssr34357 transcription start site region 34357 692 bp downstream
Tssr34358 transcription start site region 34358 744 bp downstream
Tssr34359 transcription start site region 34359 813 bp downstream
Tssr34360 transcription start site region 34360 894 bp downstream
Tssr34361 transcription start site region 34361 915 bp downstream
Tssr34362 transcription start site region 34362 964 bp downstream
Tssr34363 transcription start site region 34363 991 bp downstream
Tssr34364 transcription start site region 34364 1008 bp downstream
Tssr34365 transcription start site region 34365 1022 bp downstream
Tssr34366 transcription start site region 34366 1082 bp downstream
Tssr34367 transcription start site region 34367 1215 bp downstream
Tssr34368 transcription start site region 34368 1294 bp downstream
Tssr34369 transcription start site region 34369 1319 bp downstream
Tssr34370 transcription start site region 34370 1333 bp downstream
Tssr34371 transcription start site region 34371 1387 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory