rs229575463 SNP Detail

Summary

• ID
  rs229575463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:110806969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCACTA AGTCCAGTTT
  TCCAGTCCTT CTATTTTCTA GAAAGACTGC CTCATCTCCC AACTTCTAAG CAACCGTTTT
  ACATTCCGCT AAAAGGATGC TTTCAGAACC ACAACTGTTT AACTCAGAAA GTAAGATAGG
  CGGCCCAGCG TCCCTCTCGA ACGCGGTTTA AGCCGCCGTC CCGCAGGGGC GGGGAGCCAC
  Y
  GTGTGAGCGC TCAGAGCCGA CGGCCAATGT CTTGAGATTT CAGATGCGAT CCGACAAACG
  AACGAACGAA CGAACGAACG AATGAGCGAG TGAATGAACG AAATGACACA ACTCCTCAAA
  CTCCAGCAGA ACCCGCTGCC TAGCCCCGGG TACCTGCGGC GCCGCCCCGC AGGCCCCGGG
  GACCCTCAGC CCTTCTCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387344447	MGP_WTSI_12_112078745	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229575463					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387344447	MGP_WTSI_12_112078745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110806969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4921507G05Rik	RIKEN cDNA 4921507G05 gene			494 bp upstream
Cpgi5123	CpG island 5123			within coordinates
Gm26912	predicted gene, 26912			1741 bp downstream
Mok	MOK protein kinase			Intron
				Noncoding-Transcript-Variant
Rr403503	regulatory region 403503			299 bp upstream
Rr473007	regulatory region 473007			within coordinates
Rr473008	regulatory region 473008			382 bp proximal
Rr473009	regulatory region 473009			512 bp proximal
Rr473010	regulatory region 473010			1328 bp proximal
Rr473011	regulatory region 473011			1618 bp proximal
Tssr115236	transcription start site region 115236			486 bp upstream
Tssr117795	transcription start site region 117795			1439 bp upstream
Tssr117796	transcription start site region 117796			315 bp downstream
Tssr117797	transcription start site region 117797			370 bp downstream