rs229576586 SNP Detail

Summary

• ID
  rs229576586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9673576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACAGC CAGGGCTACA
  CAGAGAAACC CTGTCTCGAA AAAACAGAAA ACAGAAAAAA AAAAAAAAAA AAAAAACACT
  GGCGAAAAAG CAAACACTCT CCATTGCTTG CCACTCGCTG CCCTCAAAAC TTCTTAGCAA
  CATACACGGT GCATGAACCT CAACGCAGTT TGTTTTGTCC AATAGCGTGC TTAGAAGCTC
  R
  GCCAGACAGT TGTGTAATAA TAAACCCTTT ATCTTCTGAA GATACAAAAA AACGGAAAGA
  TCGCTCGTTG CGGTAGCGCG GATGAGGACC TGGTGAAATT TTTCAGCTGA AAGTCACATT
  CATTTTAAAT GCTACCCCTC TCTCTCCCCA CAACACAAAC ACCTTCCCCG CCTTCCTCTT
  TTGTAATCTT AAGGGGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651679	CHEV_3_9608516	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229576586					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9673576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	78 bp proximal
Gm56803	predicted gene, 56803	247 bp upstream
Tssr28346	transcription start site region 28346	287 bp upstream
Tssr28347	transcription start site region 28347	310 bp upstream
Tssr32578	transcription start site region 32578	1517 bp downstream
Tssr32579	transcription start site region 32579	1558 bp downstream
Tssr32580	transcription start site region 32580	1574 bp downstream
Tssr32581	transcription start site region 32581	1717 bp downstream
Zfp704	zinc finger protein 704	within coordinates