rs229578939 SNP Detail

Summary

• ID
  rs229578939
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60236299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCCTGG GCCTGGTCTC
  CAGCTCTCTA GTGTCACAGC CTGCCACTAG ACTGTCTCTG GCGTCTGTGC AGAAGTGGCC
  CTGGGGCCTG TAGCCTCACA GCTTCTCTGG GTTCTGAGCT GGTGGGATGC AGGCCTTAGC
  TGGAATTACC CTAGCCTTAC TGGGGCCAAG TATAGAGAGC CAAGGGGGCA GCTACTTTCT
  C
  TCCATCGGGG ATGGCAGTGG GTATACGCCA TCCGTGCTCC AACTCAGATG CCGGGAAAGG
  GCTGATCTAT GGATGCTGCC CACTCAGTTG GAGTGCTTTC CAGGCCCAAG GCCTGGAGGG
  TGGAGGCCCT TAGCAGTTAG ACAAGCATCA GAATTTCCAG CCTGGAGCAG CTGCAAGGGC
  TGGGAGGGGT TGGGACATGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325381	CHEV_10_59863268	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229578939					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60236299 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr223077	regulatory region 223077	1669 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	748 bp downstream
Tssr93634	transcription start site region 93634	715 bp downstream
Tssr93635	transcription start site region 93635	644 bp downstream
Tssr93636	transcription start site region 93636	233 bp upstream