rs229590478 SNP Detail

Summary

• ID
  rs229590478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4168012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGGGGGC TGGGGGGGGG GGGGCAGGAA
  GGGAGGGCGA GTTGAGAAAA AAGATAGGAA GAGAGGAAAG AAGGAGAGTG TGGGgtgtgt
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gagagagaga gagagagaga gagagagaga
  R
  aATGTGGGGT GAAGTGTGTG Tgagtgagag agagagagag atatgggagg agaggaaaaa
  agataagaga gaATTAAAGT CCCAGTAGGA GAAAGAAGTG CTGTGCAATT GCCCTGGAGC
  GTTCCCCAGG ATGCTCCTAT TTGCAGCCAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093642	CHEV_7_4116615	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229590478					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4168012 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	182 bp upstream
Gm73056	predicted gene, 73056	within coordinates
Rr641923	regulatory region 641923	1151 bp distal
Rr641924	regulatory region 641924	164 bp distal
Rr641925	regulatory region 641925	within coordinates
Rr641926	regulatory region 641926	1338 bp proximal
Rr641927	regulatory region 641927	1761 bp proximal
Tssr70452	transcription start site region 70452	747 bp upstream
Tssr70453	transcription start site region 70453	437 bp upstream
Tssr70454	transcription start site region 70454	338 bp upstream
Tssr70455	transcription start site region 70455	298 bp upstream
Tssr70456	transcription start site region 70456	272 bp upstream
Tssr70457	transcription start site region 70457	186 bp upstream
Tssr70458	transcription start site region 70458	13 bp downstream