rs229591704 SNP Detail

Summary

• ID
  rs229591704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTAATT TTCCTACTCA
  AGGATACATG TTTATTACAA TGTGTGACTG CTGCTGAAGG TTCCTTTAGG GCTTTGTCTG
  GAAGAAACAT GGTCTATATT GACAGAATAT CATGCAATAA ATGCAGTCCT GAGACAGAAA
  AATGTGAACA TGAATTTTTA AATAATTTCA CTTTGAACCT ACTGAGCAGG TTCTACTTGC
  R
  CAGTAGATAC AAGTACAGGT GAAATCCAGT TTATAGAAGA GAACACAGAG AAAATGGGGC
  TCCAGGAAGA GTGGACTAGA TCACAATCTG TTAGGAACTG AAGTTTGACC GGCCTTTCCA
  TATGGAGATG TCCTTGCTGA AGGCCATGCC ATTCTCCCAA GCGGCAGGTA AGTTTAAAGA
  CTCAAAGATG CATCTTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922386	MGP_WTSI_6_123232907	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229591704					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922386	MGP_WTSI_6_123232907	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259848 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	mRNA-UTR
Tssr58808	transcription start site region 58808	109 bp downstream
Tssr58809	transcription start site region 58809	503 bp upstream
Tssr58810	transcription start site region 58810	529 bp upstream
Tssr58811	transcription start site region 58811	565 bp upstream
Tssr63019	transcription start site region 63019	1317 bp upstream
Tssr63020	transcription start site region 63020	385 bp upstream
Tssr63021	transcription start site region 63021	307 bp upstream
Tssr63022	transcription start site region 63022	268 bp upstream
Tssr63023	transcription start site region 63023	213 bp upstream
Tssr63024	transcription start site region 63024	115 bp upstream
Tssr63025	transcription start site region 63025	83 bp upstream
Tssr63026	transcription start site region 63026	62 bp upstream
Tssr63027	transcription start site region 63027	24 bp upstream
Tssr63028	transcription start site region 63028	within coordinates
Tssr63029	transcription start site region 63029	13 bp downstream
Tssr63030	transcription start site region 63030	43 bp downstream
Tssr63031	transcription start site region 63031	100 bp downstream
Tssr63032	transcription start site region 63032	124 bp downstream
Tssr63033	transcription start site region 63033	149 bp downstream
Tssr63034	transcription start site region 63034	168 bp downstream
Tssr63035	transcription start site region 63035	189 bp downstream
Tssr63036	transcription start site region 63036	243 bp downstream
Tssr63037	transcription start site region 63037	273 bp downstream
Tssr63038	transcription start site region 63038	310 bp downstream
Tssr63039	transcription start site region 63039	369 bp downstream
Tssr63040	transcription start site region 63040	427 bp downstream
Tssr63041	transcription start site region 63041	476 bp downstream
Tssr63042	transcription start site region 63042	501 bp downstream
Tssr63043	transcription start site region 63043	511 bp downstream
Tssr63044	transcription start site region 63044	533 bp downstream
Tssr63045	transcription start site region 63045	624 bp downstream
Tssr63046	transcription start site region 63046	643 bp downstream
Tssr63047	transcription start site region 63047	666 bp downstream
Tssr63048	transcription start site region 63048	694 bp downstream
Tssr63049	transcription start site region 63049	709 bp downstream
Tssr63050	transcription start site region 63050	733 bp downstream
Tssr63051	transcription start site region 63051	785 bp downstream