rs229593378 SNP Detail

Summary

• ID
  rs229593378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115476299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaaaatgca gacagtaggg aaaagaggAa
  gtagggtgcc agggggtgca tgcttgtagt ctcagttagt tgagagcctg cgactctcat
  gtgagcctaa gagtttgagg ccagactgag ggccaaaaaa ggtcccactt cagaagagaa
  R
  TGGTGCCTAG AGTTTAGAAG AGTTTAGAAG AGAAGTGGTG CCTAGAGTTT AGTAAGCGGC
  TGTTTGTAGC ATTGCAGATC TATTTCCACC CCAAACCATC AGGGCACCAA CCCGGTTCTC
  ATCTCGTCTC ATACACAGGA AGAGACAAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892812	CHEV_3_115385568	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229593378					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115476299 () rs orientation: forward

Symbol	Name	Function Class
Gm64341	predicted gene, 64341	527 bp downstream
Rr397954	regulatory region 397954	1182 bp downstream
Rr583574	regulatory region 583574	1119 bp distal
Rr583575	regulatory region 583575	within coordinates
Tssr31331	transcription start site region 31331	493 bp upstream
Tssr35267	transcription start site region 35267	31 bp downstream