rs229593862 SNP Detail

Summary

• ID
  rs229593862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT CATGCCTCAC CGCCTCCCTC
  R
  GAGACACATG GTCACTCAAT ACTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323821032	CHEV_11_96406658	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229593862					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436170 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1031 bp proximal
Rr252638	regulatory region 252638	1571 bp distal
Rr252639	regulatory region 252639	432 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	621 bp downstream
Tssr104544	transcription start site region 104544	29 bp upstream
Tssr104545	transcription start site region 104545	82 bp upstream
Tssr104546	transcription start site region 104546	90 bp upstream
Tssr104547	transcription start site region 104547	132 bp upstream
Tssr104548	transcription start site region 104548	226 bp upstream
Tssr104549	transcription start site region 104549	239 bp upstream
Tssr104550	transcription start site region 104550	297 bp upstream
Tssr104551	transcription start site region 104551	325 bp upstream
Tssr104552	transcription start site region 104552	346 bp upstream
Tssr104553	transcription start site region 104553	1683 bp upstream