rs229597365 SNP Detail

Summary

• ID
  rs229597365
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173055774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTTCC AGGTGTAGTG
  GTGCTTTAAT CCCAGAATTT AATAGGCAGA AGCAAGAAGA TCTCTGTGGG TTCAAGACCA
  GCTTGGTCTA CATGGTGAGT TCTAGGACAT CCAGGGCTAC ATGGCAAGAC TGTTTCACAA
  AAAAAAAAAA AAAAAAGAAA AAAAAGAAAA AATACATTTA AAAAAGAACA TGGGGGGGGG
  K
  GTTTCCTGAG AGCACCAGGG CTCAGAGCTG ATACTGCTAC CCCCACAGAT CTCGGCATCT
  TCAGGCTTCT ATACAAGTCT AGCCCAGCCC TCTCCTTAAA CAATCTTATT TACTTGTTTT
  CAATTTGGGT TTTGTGGTTT AGGATAGCTT TGAACTCGAA GTTCTTCTCC CTCTGCCTCC
  CAAAGGCTGG GATAAGAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CE/J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss356661506	MGP_WTSI_2_173039482	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CE/J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs229597365					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356661506	MGP_WTSI_2_173039482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173055774 () rs orientation: forward

Symbol	Name	Function Class
Tssr22048	transcription start site region 22048	1724 bp upstream
Tssr27969	transcription start site region 27969	166 bp upstream
Tssr27970	transcription start site region 27970	60 bp upstream
Tssr27971	transcription start site region 27971	1783 bp downstream
Tssr27972	transcription start site region 27972	1826 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates