rs229597461 SNP Detail

Summary

• ID
  rs229597461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149375676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA ATCCAGCCTG TTTATTGTTC
  Y
  CCCTTTCTCC CTTTCCTTTG CCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325985186	CHEV_X_147027223	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229597461					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149375676 () rs orientation: forward

Symbol	Name	Function Class
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	within coordinates
Tssr162315	transcription start site region 162315	1260 bp upstream
Tssr162316	transcription start site region 162316	1645 bp upstream
Tssr162317	transcription start site region 162317	1658 bp upstream
Tssr162318	transcription start site region 162318	1713 bp upstream
Tssr162319	transcription start site region 162319	1740 bp upstream