rs229597719 SNP Detail

Summary

• ID
  rs229597719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46654489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC CAGGGCTACA CAGAGAAACC
  Y
  TGTATCGAAG GGAAAAAAAA AAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss643361066	FVB_NJ_13_46596382	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	T	T	C	T	C	C	C	C	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T	T	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229597719					SNP	C	C	T	C	C	T	T	C	T	C	C	C	C	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T	T	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss643361066	FVB_NJ_13_46596382	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46654489 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	890 bp upstream
Cpgi5539	CpG island 5539	770 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Gm61509	predicted gene, 61509	1882 bp upstream
Rr478915	regulatory region 478915	664 bp proximal
Rr478916	regulatory region 478916	846 bp proximal
Rr478917	regulatory region 478917	947 bp proximal
Rr478918	regulatory region 478918	1392 bp proximal
Rr478919	regulatory region 478919	1903 bp proximal
Tssr119597	transcription start site region 119597	846 bp upstream
Tssr119598	transcription start site region 119598	885 bp upstream
Tssr119599	transcription start site region 119599	1024 bp upstream
Tssr119600	transcription start site region 119600	1036 bp upstream
Tssr119601	transcription start site region 119601	1100 bp upstream
Tssr119602	transcription start site region 119602	1128 bp upstream
Tssr119603	transcription start site region 119603	1876 bp upstream
Tssr122343	transcription start site region 122343	1774 bp downstream