rs229598122 SNP Detail

Summary

• ID
  rs229598122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46993221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCCCATG GACCCAGGTA
  CAAAAACAAC CAAAGCTCAT TCCTTCATTT AGAAATAATT ACCAAAAACT AGTAAGAACT
  GGGCATGGTG GTGCACACCT TTAATCCCAG CGCTCATGAG GCAGAGGCAG GCTGGTGGTC
  TCCTGGTCTA CAGAGCAAAT TCCAGGAGAG TCAGGGCTGC ACAGAGAAAA ACCGAATACA
  R
  TGCCCCCCAT TCTCCCCCTC ACCCCCAAAC AAGATCACTT TATTCCTAAA AATTTCGTTA
  CCTGAGATTT TGTGGACTTC AGAATCTAAG TGAAATGCTG TCTCACTAGA CTTGGGAATG
  GGCAGACCTG GCAATAATGA GGGCGTGATG ATGTGTTGGG GGTCTTGGGC TGACTGAGGC
  ACTAGGGAGA GAGGAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398326268	MGP_WTSI_17_46819244	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229598122					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326268	MGP_WTSI_17_46819244	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46993221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	719 bp distal
Klhdc3	kelch domain containing 3	1381 bp upstream
Mea1	male enhanced antigen 1	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	696 bp downstream
Rr405317	regulatory region 405317	1205 bp downstream
Rr527795	regulatory region 527795	1105 bp distal
Rr527796	regulatory region 527796	584 bp proximal
Tssr5136	transcription start site region 5136	1514 bp upstream
Tssr5137	transcription start site region 5137	1351 bp upstream
Tssr144872	transcription start site region 144872	1817 bp downstream
Tssr144873	transcription start site region 144873	1284 bp downstream
Tssr144874	transcription start site region 144874	1111 bp downstream
Tssr144875	transcription start site region 144875	261 bp downstream
Tssr144876	transcription start site region 144876	255 bp downstream
Tssr148367	transcription start site region 148367	1561 bp upstream
Tssr148368	transcription start site region 148368	1539 bp upstream
Tssr148369	transcription start site region 148369	1520 bp upstream
Tssr148370	transcription start site region 148370	1461 bp upstream
Tssr148371	transcription start site region 148371	1436 bp upstream
Tssr148372	transcription start site region 148372	1362 bp upstream
Tssr148373	transcription start site region 148373	390 bp upstream
Tssr148374	transcription start site region 148374	371 bp upstream